CentOS 7 安装MySQL 5.6遇到的疑难杂症小结

在一测试服务器（CentOS Linux release 7.2.1511）上安装MySQL 5.6（5.6.19 MySQL Community Server）时遇到下面错误，这个是因为CentOS 7的默认数据库已经不再是MySQL了，而是MariaDB. MySQL安装时的mysql lib库与mariadb的库、包冲突了，如下详情所示（省略了大量日志）

[root@azrlnx06 tmp]# rpm -ivh MySQL-server-advanced-5.6.20-1.rhel5.x86_64.rpm 

Preparing...                          ################################# [100%]

        file /usr/share/mysql/czech/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/danish/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/dutch/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/english/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/estonian/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/french/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/german/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/greek/errmsg.sys from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        ........................................................................................................................................................................

        file /usr/share/mysql/charsets/macroman.xml from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

        file /usr/share/mysql/charsets/swe7.xml from install of MySQL-server-advanced-5.6.20-1.rhel5.x86_64 conflicts with file from package mariadb-libs-1:5.5.50-1.el7_2.x86_64

检查是否存在mariadb的相关组件,然后删除mariadb相关组件。如下所示：

[root@azrlnx06 mysql]# more /etc/redhat-release 

CentOS Linux release 7.2.1511 (Core) 

[root@azrlnx06 mysql]# rpm -qa |grep mariadb

mariadb-libs-5.5.50-1.el7_2.x86_64

[root@azrlnx06 mysql]# rpm -e mariadb-libs-5.5.50-1.el7_2.x86_64

error: Failed dependencies:

        libmysqlclient.so.18()(64bit) is needed by (installed) postfix-2:2.10.1-6.el7.x86_64

        libmysqlclient.so.18(libmysqlclient_18)(64bit) is needed by (installed) postfix-2:2.10.1-6.el7.x86_64

[root@azrlnx06 mysql]# rpm -e mariadb-libs-5.5.50-1.el7_2.x86_64 --nodeps

当然此处删除mariadb-libs-5.5.50-1.el7_2.x86_64组件时遇到依赖错误，遂强制删除该组件，最好使用yum删除mariadb相关组件。然后重新安装MySQL时遇到"error: MySQL-server-advanced-5.6.20-1.rhel5.x86_64: install failed"错误，如下所示：

[root@azrlnx06 mysql]# cd /tmp

[root@azrlnx06 tmp]# ls

hsperfdata_azrlnx06  jirasetup  MySQL-server-advanced-5.6.20-1.rhel5.x86_64.rpm

[root@azrlnx06 tmp]# rpm -ivh MySQL-server-advanced-5.6.20-1.rhel5.x86_64.rpm 

Preparing...                          ################################# [100%]

Updating / installing...

   1:MySQL-server-advanced-5.6.20-1.rh################################# [100%]

error: unpacking of archive failed on file /usr/bin/innochecksum;582535c8: cpio: read failed - No such file or directory

error: MySQL-server-advanced-5.6.20-1.rhel5.x86_64: install failed

[root@azrlnx06 tmp]# 

对这个错误有点莫名其妙，卸载MySQL相关组件后，重新安装MySQL，发现缺少Perl相关模组。如下所示：

[root@azrlnx06 jirasetup]# rpm -ivh MySQL-server-advanced-5.6.20-1.rhel5.x86_64.rpm 

Preparing...                          ################################# [100%]

Updating / installing...

   1:MySQL-server-advanced-5.6.20-1.rh################################# [100%]

FATAL ERROR: please install the following Perl modules before executing /usr/bin/mysql_install_db:

Data::Dumper

[root@azrlnx06 jirasetup]# 

使用yum安装了 perl perl-devel相关包（注意：此处安装MySQL时，没有输出安装相关Detail的信息，是因为Perl相关模组没有安装的缘故，此处还漏掉了安装perl-Data-Dumper）

[root@azrlnx06 jirasetup]# yum install -y perl perl-devel

安装完Perl相关组件后，重新安装MySQL，如下所示，安装成功，但是没有输出安装相关Detail的信息（因为没有安装perl-Data-Dumper），启动MySQL报错

root@azrlnx06 jirasetup]# rpm -ivh MySQL-server-advanced-5.6.20-1.rhel5.x86_64.rpm 

Preparing...                          ################################# [100%]

Updating / installing...

   1:MySQL-server-advanced-5.6.20-1.rh################################# [100%]

[root@azrlnx06 jirasetup]# rpm -ivh MySQL-client-advanced-5.6.20-1.rhel5.x86_64.rpm 

Preparing...                          ################################# [100%]

Updating / installing...

   1:MySQL-client-advanced-5.6.20-1.rh################################# [100%]

[root@azrlnx06 ~]# service mysql start

Starting MySQL............. ERROR! The server quit without updating PID file (/var/lib/mysql/azrlnx06.pid).

[root@azrlnx06 ~]# 

找到MySQL的错误日志，然后检查/var/lib/mysql/azrlnx06.err错误日志，发现如下错误信息：

[root@azrlnx06 mysql]# find / -name *.err

/var/lib/mysql/azrlnx06.err

/var/log/azure/Microsoft.OSTCExtensions.LinuxDiagnostic/2.3.9011/mdsd.err

/var/log/azure/Microsoft.OSTCExtensions.LinuxDiagnostic/2.3.9013/mdsd.err

/var/log/mdsd/mdsd.err

[root@azrlnx06 mysql]# more /var/lib/mysql/azrlnx06.err

161111 03:28:25 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql

2016-11-11 03:28:25 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).

2016-11-11 03:28:25 2144 [Note] Plugin 'FEDERATED' is disabled.

/usr/sbin/mysqld: Table 'mysql.plugin' doesn't exist

2016-11-11 03:28:25 2144 [ERROR] Can't open the mysql.plugin table. Please run mysql_upgrade to create it.

2016-11-11 03:28:25 2144 [Note] InnoDB: Using atomics to ref count buffer pool pages

2016-11-11 03:28:25 2144 [Note] InnoDB: The InnoDB memory heap is disabled

2016-11-11 03:28:25 2144 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins

2016-11-11 03:28:25 2144 [Note] InnoDB: Memory barrier is not used

2016-11-11 03:28:25 2144 [Note] InnoDB: Compressed tables use zlib 1.2.3

2016-11-11 03:28:25 2144 [Note] InnoDB: Using Linux native AIO

2016-11-11 03:28:25 2144 [Note] InnoDB: Using CPU crc32 instructions

2016-11-11 03:28:25 2144 [Note] InnoDB: Initializing buffer pool, size = 128.0M

2016-11-11 03:28:25 2144 [Note] InnoDB: Completed initialization of buffer pool

2016-11-11 03:28:25 2144 [Note] InnoDB: The first specified data file ./ibdata1 did not exist: a new database to be created!

2016-11-11 03:28:25 2144 [Note] InnoDB: Setting file ./ibdata1 size to 12 MB

2016-11-11 03:28:25 2144 [Note] InnoDB: Database physically writes the file full: wait...

2016-11-11 03:28:26 2144 [Note] InnoDB: Setting log file ./ib_logfile101 size to 48 MB

2016-11-11 03:28:31 2144 [Note] InnoDB: Setting log file ./ib_logfile1 size to 48 MB

2016-11-11 03:28:37 2144 [Note] InnoDB: Renaming log file ./ib_logfile101 to ./ib_logfile0

2016-11-11 03:28:37 2144 [Warning] InnoDB: New log files created, LSN=45781

2016-11-11 03:28:37 2144 [Note] InnoDB: Doublewrite buffer not found: creating new

2016-11-11 03:28:37 2144 [Note] InnoDB: Doublewrite buffer created

2016-11-11 03:28:37 2144 [Note] InnoDB: 128 rollback segment(s) are active.

2016-11-11 03:28:37 2144 [Warning] InnoDB: Creating foreign key constraint system tables.

2016-11-11 03:28:37 2144 [Note] InnoDB: Foreign key constraint system tables created

2016-11-11 03:28:37 2144 [Note] InnoDB: Creating tablespace and datafile system tables.

2016-11-11 03:28:38 2144 [Note] InnoDB: Tablespace and datafile system tables created.

2016-11-11 03:28:38 2144 [Note] InnoDB: Waiting for purge to start

2016-11-11 03:28:38 2144 [Note] InnoDB: 5.6.20 started; log sequence number 0

2016-11-11 03:28:38 2144 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: ef3b0cd5-a7be-11e6-98b3-000d3a8062fe.

2016-11-11 03:28:38 2144 [Note] RSA private key file not found: /var/lib/mysql//private_key.pem. Some authentication plugins will not work.

2016-11-11 03:28:38 2144 [Note] RSA public key file not found: /var/lib/mysql//public_key.pem. Some authentication plugins will not work.

2016-11-11 03:28:38 2144 [Note] Server hostname (bind-address): '*'; port: 3306

2016-11-11 03:28:38 2144 [Note] IPv6 is available.

2016-11-11 03:28:38 2144 [Note]   - '::' resolves to '::';

2016-11-11 03:28:38 2144 [Note] Server socket created on IP: '::'.

2016-11-11 03:28:38 2144 [ERROR] Fatal error: Can't open and lock privilege tables: Table 'mysql.user' doesn't exist

161111 03:28:38 mysqld_safe mysqld from pid file /var/lib/mysql/azrlnx06.pid ended

搜索了一些相关资料，应该是perl-Data-Dumper模组没有安装，导致安装过程中，初始化数据库失败，所以启动MySQL服务时，找不到相关系统表。具体参考官方文档MySQL-server RPM does not install perl-Data-Dumper as a dependency

Description:

MySQL-server requires perl-Data-Dumper to function. However, perl-Data-Dumper is not listed by the MySQL-server RPM as a dependency. So if a linux server does not have perl-Data-Dumper installed, the install-mysql-db will fail. And because of missing the initial database, the mysql service could not be started.

How to repeat:

On a linux server, make sure there is no perl-Data-Dumper installed. Install MySQL-server using yum. There should be error message complaining database could not be created.

Suggested fix:

Add perl-Data-Dumper as a dependency of the RPM package

解决方法：

 

 

1：安装perl-Data-Dumper模组。

[root@azrlnx06 mysql]# yum install -y perl-Data-Dumper

2：初始化数据库

[root@azrlnx06 mysql]# sudo mysql_install_db --user=mysql --basedir=/usr/ --ldata=/var/lib/mysql/

[root@azrlnx06 mysql]# service mysql start

Starting MySQL. SUCCESS! 

[root@azrlnx06 mysql]# /usr//bin/mysqladmin -u root password 'Qwe!23'

Warning: Using a password on the command line interface can be insecure.

当然也可以卸载MySQL，然后重新安装，就能看到安装过程输出的Detail信息输出了。