R, Bioconductor filterVcf: Extract Variants of Interest from a Large VCF File (Paul Shannon) We demonstrate three methods:  filtering by genomic region,  filtering on attributes ofeach specific variant call, and intersecting with known regions of int…

VCFtools can convert VCF files into formats convenient for use in other programs. One such example is the ability to convert into PLINK format. The following function will output the variants in .ped and .map files. ./vcftools --vcf input_data.vcf --…

通过GATK calling出来的SNP如果使用UnifiedGenotype获得的SNP文件是分sample的,但是如果使用vcftools或者ANGSD则需要Vcf文件是multi-sample的,这里就需要我们将不同samples的文件进行合并,可以通过vcftools的perl模块进行,但是这种方式对perl的要求较高,且操作比较复杂,这里我们选择使用Bcftools,操作简便. 分三步: 将vcf进行压缩,批量压缩的方法: bgzip -c -f -@ merge.vcf > merg…

问题描述:当登录icloud.com,进入通讯录的时候,导入VCF格式的联系人的时候会报错.如图: 1.从outlook的联系人中选一个联系人,导出联系人卡片-vCard文件 (如果是塞班手机,可以用export tool工具导出vcf格式文件,export tools支持如下版本和手机 Required : Symbian s60v3 & Sybmian s60v5 Compatible Devices : Symbian s60v3 & Sybmian s60v5 Phone: Nok…

by Umer Zeeshan Ijaz The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your current directory, change directory (cd) to t…

Awesome C/C++ A curated list of awesome C/C++ frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff. Awesome C/C++ Standard Libraries Frameworks Artificial Intelligence Asynchronous Event Loop Audio Biology BitTorrent CLI…

Is there a way to save a protein-ligand complex as a PDB file in AutoDock? I have completed my dockings of a ligand to a protein.  Is there a way to save a protein-ligand complex as a PDB file in AutoDock? Extracting Dockings from DLG Files AutoDock…

Gumshoe - Microsoft Code Coverage Test Toolset 2014-07-17 What is Gumshoe? How to instrument a binary? step-by-step instruction Step 1: Install GumShoe Step 2: Instrument binary Step 3: Rename the binaries as follows and copy to run path Step4: Start…

很棒的 C/C++ 框架,类库,资源集合. Awesome C/C++ Standard Libraries Frameworks Artificial Intelligence Asynchronous Event Loop Audio Biology Compression Concurrency Containers Cryptography Database Debug Game Engine GUI Graphics Image Processing Internationalizat…

https://github.com/fffaraz/awesome-cpp Awesome C/C++ A curated list of awesome C/C++ frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff. Awesome C/C++ Standard Libraries Frameworks Artificial Intelligence Asynchronous E…