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Problem Given two strings ss and tt, tt is a substring of ss if tt is contained as a contiguous collection of symbols in ss (as a result, tt must be no longer than ss). The position of a symbol in a string is the total number of symbols found to its…
Hash function From Wikipedia, the free encyclopedia   A hash function that maps names to integers from 0 to 15. There is a collision between keys "John Smith" and "Sandra Dee". A hash function is any function that maps data of arbitrar…
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DNA motif 搜索算法总结 2011-09-15 ~ ADMIN 翻译自:A survey of DNA motif finding algorithms, Modan K Das et. al., BMC Bioinformatics 2007, 8(suppl 7):S21 dio:10.1186/1471-2105-8-s7-s21 DNA功能域(motif)简单地讲就是一段特定模式的DNA序列,它之所以可以具有生物学功能是因为它的特殊序列可以和调控蛋白结合,比如转录因子,从而可以在…
Problem A common substring of a collection of strings is a substring of every member of the collection. We say that a common substring is a longest common substring if there does not exist a longer common substring. For example, "CG" is a common…
DNA binding motif比对算法 2012-08-31 ~ ADMIN 之前介绍了序列比对的一些算法.本节主要讲述motif(有人翻译成结构模式,但本文一律使用基模)的比对算法. 那么什么是基模么?基模是对DNA结合位点的一种描述.它有几种描述方式,一种是共同序列(consensus sequences)一种是位点倾向距阵(Position Specific Frequency Matrices(PSFM))而对于PSFM,有两种表示方式,一种叫PCM,一种叫PFM,前者是Positi…
Problem To allow for the presence of its varying forms, a protein motif is represented by a shorthand as follows: [XY] means "either X or Y" and {X} means "any amino acid except X." For example, the N-glycosylation motif is written as…
http://acm.hdu.edu.cn/showproblem.php?pid=1560 DNA sequence Time Limit: 15000/5000 MS (Java/Others)    Memory Limit: 32768/32768 K (Java/Others) Total Submission(s): 732    Accepted Submission(s): 356 Problem Description The twenty-first century is a…
Finding File Versions in the Oracle Applications EBusiness Suite - Checking the $HEADER (文档 ID 858957.1) In this Document  Goal  Solution     Diagnostic     Form Versions     ... Form Versions: Help About     ... Form Versions: OS/UNIX     ... Form V…
DNA sequence Time Limit : 15000/5000ms (Java/Other)   Memory Limit : 32768/32768K (Java/Other) Total Submission(s) : 15   Accepted Submission(s) : 7 Font: Times New Roman | Verdana | Georgia Font Size: ← → Problem Description The twenty-first century…
生物信息学原理作业第四弹:DNA序列组装(非循环子图) 原理:生物信息学(孙啸) 大致思想: 1. 这个算法理解细节理解比较困难,建议看孙啸的生物信息学相关章节. 2. 算法要求所有序列覆盖整个目标DNA,并保证相邻片段有足够的覆盖连接(引自孙啸 生物信息学). 3. 最后推导出符合条件的序列构成的有向图没有回路,并有哈密顿路径. 4. 利用拓扑排序,得到顶点的有序排列. 5. 组装. 贴上Python代码,发现问题我会及时更正. 转载请保留出处! 简单DNA序列组装(非循环子图) # -*-…
HDU 1560 DNA sequence(DNA序列) Time Limit: 15000/5000 MS (Java/Others)    Memory Limit: 32768/32768 K (Java/Others)   Problem Description - 题目描述 The twenty-first century is a biology-technology developing century. We know that a gene is made of DNA. Th…
The twenty-first century is a biology-technology developing century. We know that a gene is made of DNA. The nucleotide bases from which DNA is built are A(adenine), C(cytosine), G(guanine), and T(thymine). Finding the longest common subsequence betw…
[怪毛匠子]独家整理 不可以转载 MEME工具 http://meme-suite.org DNA motif 搜索算法总结 http://www.bbioo.com/lifesciences/40-115984-1.html online tools http://chipseek.cgu.edu.tw/main_menu.py RSAT http://rsat.sb-roscoff.fr https://bioconductor.org/help/course-materials/2010/…
Finding Palindromes Time Limit: 10000MS   Memory Limit: 262144K Total Submissions:4710   Accepted: 879 Case Time Limit: 2000MS Description A word is called a palindrome if we read from right to left is as same as we read from left to right. For examp…
DNA sequence Time Limit: 15000/5000 MS (Java/Others)    Memory Limit: 32768/32768 K (Java/Others) Total Submission(s): 3503    Accepted Submission(s): 1681 Problem Description The twenty-first century is a biology-technology developing century. We kn…
DNA sequence Time Limit : 15000/5000ms (Java/Other)   Memory Limit : 32768/32768K (Java/Other) Total Submission(s) : 15   Accepted Submission(s) : 7 Font: Times New Roman | Verdana | Georgia Font Size: ← → Problem Description The twenty-first century…
题目链接:https://vjudge.net/problem/POJ-3376 Finding Palindromes Time Limit: 10000MS   Memory Limit: 262144K Total Submissions: 4244   Accepted: 796 Case Time Limit: 2000MS Description A word is called a palindrome if we read from right to left is as sam…
题目链接:http://acm.hdu.edu.cn/showproblem.php?pid=1560 DNA sequence Time Limit: 15000/5000 MS (Java/Others)    Memory Limit: 32768/32768 K (Java/Others) Total Submission(s): 2999    Accepted Submission(s): 1462 Problem Description The twenty-first centu…
题目: The twenty-first century is a biology-technology developing century. We know that a gene is made of DNA. The nucleotide bases from which DNA is built are A(adenine), C(cytosine), G(guanine), and T(thymine). Finding the longest common subsequence…
WebService可以有很多种调用方式,除了之前说的,还可以有jquery.拿原生的Ajax做调用,拿jquery怎么调用啊?原生的能调,jquery指定也能调.原生的Ajax是通过网页直接点HTML文件就能访问,它不行.它得放到web容器里面,因为它有跨域问题.jquery得放到web项目里面,把web项目发布到服务器里才能访问.java项目,不能放这里面. web项目cxf-web-4jquery-client得有一个页面,这个页面是用来调用的. Ajax也有contentType. 想调…
Problem Description The twenty-first century is a biology-technology developing century. We know that a gene is made of DNA. The nucleotide bases from which DNA is built are A(adenine), C(cytosine), G(guanine), and T(thymine). Finding the longest com…
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Motif discovery is in loose terms the problem of finding interesting patterns in sequences. motif: interest patterns/ subsequences in sequences. two ways: 1. operate directly on sequences of real numbers, 2. operate on sequences of symbols. time seri…
DNA sequence Time Limit: 15000/5000 MS (Java/Others)    Memory Limit: 32768/32768 K (Java/Others)Total Submission(s): 4217    Accepted Submission(s): 2020 Problem Description The twenty-first century is a biology-technology developing century. We kno…
Network Motif 文献调研 概述:Network motifs,可以认为是网络中频繁出现的子图模式,是复杂网络的"构建块".有两篇发表在science上的论文给出motif比较权威的解释:① MILO, Ron, et al将motifs描述为:recurring, significant patterns of inter-connections. ②BENSON et al. 将motif描述为:The most common higher-order structure…
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All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA. Write a function to find all the 10-letter-long seq…